IL_6LKQ_036
3D structure
- PDB id
- 6LKQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The Structural Basis for Inhibition of Ribosomal Translocation by Viomycin
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- CAAAC*GGUAG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6LKQ_036 not in the Motif Atlas
- Homologous match to IL_4LFB_033
- Geometric discrepancy: 0.1261
- The information below is about IL_4LFB_033
- Detailed Annotation
- tSH-tHW-tHS
- Broad Annotation
- No text annotation
- Motif group
- IL_17136.7
- Basepair signature
- cWW-tSH-tHW-tHS-cWW
- Number of instances in this motif group
- 14
Unit IDs
6LKQ|1|s|C|779
6LKQ|1|s|A|780
6LKQ|1|s|A|781
6LKQ|1|s|A|782
6LKQ|1|s|C|783
*
6LKQ|1|s|G|799
6LKQ|1|s|G|800
6LKQ|1|s|U|801
6LKQ|1|s|A|802
6LKQ|1|s|G|803
Current chains
- Chain s
- 16S ribosomal RNA
Nearby chains
- Chain J
- 30S ribosomal protein S11
- Chain T
- 30S ribosomal protein S21
- Chain t
- Large subunit ribosomal RNA; LSU rRNA
Coloring options: