IL_6LKQ_056

3D structure

PDB id

6LKQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Structural Basis for Inhibition of Ribosomal Translocation by Viomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GUC*GUC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6LKQ_056 not in the Motif Atlas

Geometric match to IL_4V88_465

Geometric discrepancy: 0.129

The information below is about IL_4V88_465

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

6LKQ|1|s|G|1405
6LKQ|1|s|U|1406
6LKQ|1|s|C|1407
*
6LKQ|1|s|G|1494
6LKQ|1|s|U|1495
6LKQ|1|s|C|1496

Current chains

Chain s

16S ribosomal RNA

Nearby chains

Chain AA

Viomycin

Chain t

Large subunit ribosomal RNA; LSU rRNA

Chain w

messenger RNA

Chain y

Viomycin