IL_6LKQ_068
3D structure
- PDB id
- 6LKQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The Structural Basis for Inhibition of Ribosomal Translocation by Viomycin
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- GGAACUG*CUAAGUAC
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6LKQ_068 not in the Motif Atlas
- Geometric match to IL_5J7L_250
- Geometric discrepancy: 0.0774
- The information below is about IL_5J7L_250
- Detailed Annotation
- 8x7 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_04346.10
- Basepair signature
- cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 15
Unit IDs
6LKQ|1|t|G|188
6LKQ|1|t|G|189
6LKQ|1|t|A|190
6LKQ|1|t|A|191
6LKQ|1|t|C|192
6LKQ|1|t|U|193
6LKQ|1|t|G|194
*
6LKQ|1|t|C|201
6LKQ|1|t|U|202
6LKQ|1|t|A|203
6LKQ|1|t|A|204
6LKQ|1|t|G|205
6LKQ|1|t|U|206
6LKQ|1|t|A|207
6LKQ|1|t|C|208
Current chains
- Chain t
- 23S ribosomal RNA
Nearby chains
- Chain 2
- 50S ribosomal protein L15
- Chain f
- 50S ribosomal protein L28
- Chain l
- 50S ribosomal protein L35
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