IL_6LKQ_083

3D structure

PDB id

6LKQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Structural Basis for Inhibition of Ribosomal Translocation by Viomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GGG*CAAUC

Length

8 nucleotides

Bulged bases

6LKQ|1|t|G|776, 6LKQ|1|t|A|788, 6LKQ|1|t|A|789

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6LKQ_083 not in the Motif Atlas

Geometric match to IL_7A0S_021

Geometric discrepancy: 0.0827

The information below is about IL_7A0S_021

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_06549.2

Basepair signature

cWW-cWW

Number of instances in this motif group

6

Unit IDs

6LKQ|1|t|G|775
6LKQ|1|t|G|776
6LKQ|1|t|G|777
*
6LKQ|1|t|C|787
6LKQ|1|t|A|788
6LKQ|1|t|A|789
6LKQ|1|t|U|790
6LKQ|1|t|C|791

Current chains

Chain t

23S ribosomal RNA

Nearby chains

Chain U

50S ribosomal protein L2

Chain a

50S ribosomal protein L22

Chain k

50S ribosomal protein L34