IL_6LKQ_097

3D structure

PDB id

6LKQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Structural Basis for Inhibition of Ribosomal Translocation by Viomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

UUAAGUG*CUAAA

Length

12 nucleotides

Bulged bases

6LKQ|1|t|A|1143

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6LKQ_097 not in the Motif Atlas

Homologous match to IL_4WF9_039

Geometric discrepancy: 0.1455

The information below is about IL_4WF9_039

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_57188.5

Basepair signature

cWW-tWW-L-tWW-cWW-cSH

Number of instances in this motif group

5

Unit IDs

6LKQ|1|t|U|1018
6LKQ|1|t|U|1019
6LKQ|1|t|A|1020
6LKQ|1|t|A|1021
6LKQ|1|t|G|1022
6LKQ|1|t|U|1023
6LKQ|1|t|G|1024
*
6LKQ|1|t|C|1140
6LKQ|1|t|U|1141
6LKQ|1|t|A|1142
6LKQ|1|t|A|1143
6LKQ|1|t|A|1144

Current chains

Chain t

23S ribosomal RNA

Nearby chains

Chain 0

50S ribosomal protein L13

Chain Y

50S ribosomal protein L6

Chain m

50S ribosomal protein L36