3D structure

PDB id
6LKQ (explore in PDB, NAKB, or RNA 3D Hub)
Description
The Structural Basis for Inhibition of Ribosomal Translocation by Viomycin
Experimental method
X-RAY DIFFRACTION
Resolution
3.1 Å

Loop

Sequence
GGGAAAC*GGAAGAUGUAACGGGGC
Length
24 nucleotides
Bulged bases
6LKQ|1|t|A|1127
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6LKQ_098 not in the Motif Atlas
Geometric match to IL_5J7L_281
Geometric discrepancy: 0.0739
The information below is about IL_5J7L_281
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_50715.3
Basepair signature
cWW-tSH-tHH-L-R-L-R-L-tWW-L-cWW-L-L-L-R-L
Number of instances in this motif group
4

Unit IDs

6LKQ|1|t|G|1024
6LKQ|1|t|G|1025
6LKQ|1|t|G|1026
6LKQ|1|t|A|1027
6LKQ|1|t|A|1028
6LKQ|1|t|A|1029
6LKQ|1|t|C|1030
*
6LKQ|1|t|G|1124
6LKQ|1|t|G|1125
6LKQ|1|t|A|1126
6LKQ|1|t|A|1127
6LKQ|1|t|G|1128
6LKQ|1|t|A|1129
6LKQ|1|t|U|1130
6LKQ|1|t|G|1131
6LKQ|1|t|U|1132
6LKQ|1|t|A|1133
6LKQ|1|t|A|1134
6LKQ|1|t|C|1135
6LKQ|1|t|G|1136
6LKQ|1|t|G|1137
6LKQ|1|t|G|1138
6LKQ|1|t|G|1139
6LKQ|1|t|C|1140

Current chains

Chain t
23S ribosomal RNA

Nearby chains

Chain 0
50S ribosomal protein L13
Chain 3
50S ribosomal protein L16
Chain V
50S ribosomal protein L3
Chain m
50S ribosomal protein L36
Chain u
5S ribosomal RNA; 5S rRNA

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.9397 s
Application loaded.