IL_6LKQ_101

3D structure

PDB id

6LKQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Structural Basis for Inhibition of Ribosomal Translocation by Viomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CCCAGACAGC*GUCGAG

Length

16 nucleotides

Bulged bases

6LKQ|1|t|A|1046

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6LKQ|1|t|C|1043
6LKQ|1|t|C|1044
6LKQ|1|t|C|1045
6LKQ|1|t|A|1046
6LKQ|1|t|G|1047
6LKQ|1|t|A|1048
6LKQ|1|t|C|1049
6LKQ|1|t|A|1050
6LKQ|1|t|G|1051
6LKQ|1|t|C|1052
*
6LKQ|1|t|G|1107
6LKQ|1|t|U|1108
6LKQ|1|t|C|1109
6LKQ|1|t|G|1110
6LKQ|1|t|A|1111
6LKQ|1|t|G|1112

Current chains

Chain t

23S ribosomal RNA

Nearby chains

Chain Y

50S ribosomal protein L6

Chain m

50S ribosomal protein L36

Chain n

50S ribosomal protein L10