IL_6LKQ_106
3D structure
- PDB id
- 6LKQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The Structural Basis for Inhibition of Ribosomal Translocation by Viomycin
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- AUAAGUAA*UGAAAUU
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6LKQ_106 not in the Motif Atlas
- Homologous match to IL_5J7L_289
- Geometric discrepancy: 0.0671
- The information below is about IL_5J7L_289
- Detailed Annotation
- 8x7 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_04346.10
- Basepair signature
- cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 15
Unit IDs
6LKQ|1|t|A|1262
6LKQ|1|t|U|1263
6LKQ|1|t|A|1264
6LKQ|1|t|A|1265
6LKQ|1|t|G|1266
6LKQ|1|t|U|1267
6LKQ|1|t|A|1268
6LKQ|1|t|A|1269
*
6LKQ|1|t|U|2011
6LKQ|1|t|G|2012
6LKQ|1|t|A|2013
6LKQ|1|t|A|2014
6LKQ|1|t|A|2015
6LKQ|1|t|U|2016
6LKQ|1|t|U|2017
Current chains
- Chain t
- 23S ribosomal RNA
Nearby chains
- Chain W
- 50S ribosomal protein L4
- Chain a
- 50S ribosomal protein L22
- Chain i
- 50S ribosomal protein L32
Coloring options: