IL_6LKQ_123
3D structure
- PDB id
- 6LKQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The Structural Basis for Inhibition of Ribosomal Translocation by Viomycin
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- GGAA*UC
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6LKQ_123 not in the Motif Atlas
- Homologous match to IL_5J7L_306
- Geometric discrepancy: 0.0933
- The information below is about IL_5J7L_306
- Detailed Annotation
- Major groove platform; stack outside cWW
- Broad Annotation
- Major groove platform
- Motif group
- IL_50694.7
- Basepair signature
- cWW-tSH-cWW-L
- Number of instances in this motif group
- 27
Unit IDs
6LKQ|1|t|G|1666
6LKQ|1|t|G|1667
6LKQ|1|t|A|1668
6LKQ|1|t|A|1669
*
6LKQ|1|t|U|1993
6LKQ|1|t|C|1994
Current chains
- Chain t
- 23S ribosomal RNA
Nearby chains
- Chain 1
- 50S ribosomal protein L14
- Chain V
- 50S ribosomal protein L3
Coloring options: