IL_6LKQ_125

3D structure

PDB id

6LKQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Structural Basis for Inhibition of Ribosomal Translocation by Viomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CGUAAC*GGAGAAG

Length

13 nucleotides

Bulged bases

6LKQ|1|t|G|1699

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6LKQ_125 not in the Motif Atlas

Homologous match to IL_5J7L_308

Geometric discrepancy: 0.0684

The information below is about IL_5J7L_308

Detailed Annotation

tSH-tSH-tHH-tHS

Broad Annotation

No text annotation

Motif group

IL_47346.2

Basepair signature

cWW-tSH-L-R-tHH-tHS-cWW

Number of instances in this motif group

7

Unit IDs

6LKQ|1|t|C|1686
6LKQ|1|t|G|1687
6LKQ|1|t|U|1688
6LKQ|1|t|A|1689
6LKQ|1|t|A|1690
6LKQ|1|t|C|1691
*
6LKQ|1|t|G|1696
6LKQ|1|t|G|1697
6LKQ|1|t|A|1698
6LKQ|1|t|G|1699
6LKQ|1|t|A|1700
6LKQ|1|t|A|1701
6LKQ|1|t|G|1702

Current chains

Chain t

23S ribosomal RNA

Nearby chains

Chain U

50S ribosomal protein L2

Chain s

Small subunit ribosomal RNA; SSU rRNA