IL_6LKQ_126
3D structure
- PDB id
- 6LKQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The Structural Basis for Inhibition of Ribosomal Translocation by Viomycin
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- UAUGUAG*UGAAA
- Length
- 12 nucleotides
- Bulged bases
- 6LKQ|1|t|U|1714
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6LKQ_126 not in the Motif Atlas
- Homologous match to IL_5J7L_309
- Geometric discrepancy: 0.2018
- The information below is about IL_5J7L_309
- Detailed Annotation
- 6x5 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_88269.4
- Basepair signature
- cWW-tWW-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 3
Unit IDs
6LKQ|1|t|U|1712
6LKQ|1|t|A|1713
6LKQ|1|t|U|1714
6LKQ|1|t|G|1715
6LKQ|1|t|U|1716
6LKQ|1|t|A|1717
6LKQ|1|t|G|1718
*
6LKQ|1|t|U|1742
6LKQ|1|t|G|1743
6LKQ|1|t|A|1744
6LKQ|1|t|A|1745
6LKQ|1|t|A|1746
Current chains
- Chain t
- 23S ribosomal RNA
Nearby chains
No other chains within 10ÅColoring options: