IL_6LKQ_149

3D structure

PDB id

6LKQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Structural Basis for Inhibition of Ribosomal Translocation by Viomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

AUA*UGUUU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6LKQ_149 not in the Motif Atlas

Geometric match to IL_7A0S_086

Geometric discrepancy: 0.259

The information below is about IL_7A0S_086

Detailed Annotation

Major groove minor groove platform with extra cWW

Broad Annotation

Major groove minor groove platform with extra cWW

Motif group

IL_51387.3

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

21

Unit IDs

6LKQ|1|t|A|2459
6LKQ|1|t|U|2460
6LKQ|1|t|A|2461
*
6LKQ|1|t|U|2489
6LKQ|1|t|G|2490
6LKQ|1|t|U|2491
6LKQ|1|t|U|2492
6LKQ|1|t|U|2493

Current chains

Chain t

23S ribosomal RNA

Nearby chains

Chain 3

50S ribosomal protein L16