IL_6LKQ_150

3D structure

PDB id

6LKQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Structural Basis for Inhibition of Ribosomal Translocation by Viomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CCAAG*CGACG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6LKQ_150 not in the Motif Atlas

Homologous match to IL_5J7L_338

Geometric discrepancy: 0.1209

The information below is about IL_5J7L_338

Detailed Annotation

Double sheared with non-canonical cWW

Broad Annotation

Double sheared

Motif group

IL_17948.2

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

13

Unit IDs

6LKQ|1|t|C|2466
6LKQ|1|t|C|2467
6LKQ|1|t|A|2468
6LKQ|1|t|A|2469
6LKQ|1|t|G|2470
*
6LKQ|1|t|C|2480
6LKQ|1|t|G|2481
6LKQ|1|t|A|2482
6LKQ|1|t|C|2483
6LKQ|1|t|G|2484

Current chains

Chain t

23S ribosomal RNA

Nearby chains

Chain 3

50S ribosomal protein L16

Chain m

50S ribosomal protein L36