IL_6LKQ_155

3D structure

PDB id

6LKQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Structural Basis for Inhibition of Ribosomal Translocation by Viomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CG*CAG

Length

5 nucleotides

Bulged bases

6LKQ|1|t|A|2602

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6LKQ_155 not in the Motif Atlas

Homologous match to IL_5J7L_344

Geometric discrepancy: 0.1767

The information below is about IL_5J7L_344

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.6

Basepair signature

cWW-L-cWW

Number of instances in this motif group

130

Unit IDs

6LKQ|1|t|C|2591
6LKQ|1|t|G|2592
*
6LKQ|1|t|C|2601
6LKQ|1|t|A|2602
6LKQ|1|t|G|2603

Current chains

Chain t

23S ribosomal RNA

Nearby chains

Chain U

50S ribosomal protein L2