IL_6LKQ_176

3D structure

PDB id

6LKQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Structural Basis for Inhibition of Ribosomal Translocation by Viomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

UAGAGG*CUGGA

Length

11 nucleotides

Bulged bases

6LKQ|1|s|A|665

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6LKQ|1|s|U|662
6LKQ|1|s|A|663
6LKQ|1|s|G|664
6LKQ|1|s|A|665
6LKQ|1|s|G|666
6LKQ|1|s|G|667
*
6LKQ|1|s|C|739
6LKQ|1|s|U|740
6LKQ|1|s|G|741
6LKQ|1|s|G|742
6LKQ|1|s|A|743

Current chains

Chain s

16S ribosomal RNA

Nearby chains

Chain E

30S ribosomal protein S6

Chain N

30S ribosomal protein S15

Chain Q

30S ribosomal protein S18

Chain T

30S ribosomal protein S21