3D structure

PDB id
6LKQ (explore in PDB, NAKB, or RNA 3D Hub)
Description
The Structural Basis for Inhibition of Ribosomal Translocation by Viomycin
Experimental method
X-RAY DIFFRACTION
Resolution
3.1 Å

Loop

Sequence
GGGGAGC*GUCC
Length
11 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

6LKQ|1|s|G|773
6LKQ|1|s|G|774
6LKQ|1|s|G|775
6LKQ|1|s|G|776
6LKQ|1|s|A|777
6LKQ|1|s|G|778
6LKQ|1|s|C|779
*
6LKQ|1|s|G|803
6LKQ|1|s|U|804
6LKQ|1|s|C|805
6LKQ|1|s|C|806

Current chains

Chain s
16S ribosomal RNA

Nearby chains

Chain J
30S ribosomal protein S11
Chain T
30S ribosomal protein S21
Chain U
50S ribosomal protein L2
Chain t
Large subunit ribosomal RNA; LSU rRNA

Coloring options:

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