IL_6LKQ_181

3D structure

PDB id

6LKQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Structural Basis for Inhibition of Ribosomal Translocation by Viomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

AAUUC*GUUAU

Length

10 nucleotides

Bulged bases

6LKQ|1|t|U|846, 6LKQ|1|t|U|931

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6LKQ_181 not in the Motif Atlas

Homologous match to IL_5J7L_399

Geometric discrepancy: 0.3027

The information below is about IL_5J7L_399

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_96236.1

Basepair signature

cWW-tWW-cWW-L-cWW

Number of instances in this motif group

1

Unit IDs

6LKQ|1|t|A|844
6LKQ|1|t|A|845
6LKQ|1|t|U|846
6LKQ|1|t|U|847
6LKQ|1|t|C|848
*
6LKQ|1|t|G|930
6LKQ|1|t|U|931
6LKQ|1|t|U|932
6LKQ|1|t|A|933
6LKQ|1|t|U|934

Current chains

Chain t

23S ribosomal RNA

Nearby chains

Chain h

50S ribosomal protein L30