IL_6LQM_007

3D structure

PDB id

6LQM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a pre-60S ribosomal subunit - state C

Experimental method

ELECTRON MICROSCOPY

Resolution

3.09 Å

Loop

Sequence

CGAAU*ACAUGUG

Length

12 nucleotides

Bulged bases

6LQM|1|2|G|119, 6LQM|1|2|U|150

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6LQM_007 not in the Motif Atlas

Homologous match to IL_8GLP_287

Geometric discrepancy: 0.1219

The information below is about IL_8GLP_287

Detailed Annotation

Kink-turn with embedded cWW pair

Broad Annotation

No text annotation

Motif group

IL_65996.1

Basepair signature

cWW-L-cWW-L-tSH-R-cWW

Number of instances in this motif group

4

Unit IDs

6LQM|1|2|C|118
6LQM|1|2|G|119
6LQM|1|2|A|120
6LQM|1|2|A|121
6LQM|1|2|U|122
*
6LQM|1|2|A|147
6LQM|1|2|C|148
6LQM|1|2|A|149
6LQM|1|2|U|150
6LQM|1|2|G|151
6LQM|1|2|U|152
6LQM|1|2|G|153

Current chains

Chain 2

28S rRNA

Nearby chains

Chain 8

5.8S ribosomal RNA; 5.8S rRNA

Chain G

60S ribosomal protein L7a

Chain H

60S ribosomal protein L35

Chain U

60S ribosomal protein L15