3D structure

PDB id
8GLP (explore in PDB, NAKB, or RNA 3D Hub)
Description
mRNA decoding in human is kinetically and structurally distinct from bacteria (Consensus LSU focused refined structure)
Experimental method
ELECTRON MICROSCOPY
Resolution
1.67 Å

Loop

Sequence
CGAAU*ACAUGUG
Length
12 nucleotides
Bulged bases
8GLP|1|L5|G|119, 8GLP|1|L5|U|150
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

8GLP|1|L5|C|118
8GLP|1|L5|G|119
8GLP|1|L5|A|120
8GLP|1|L5|A|121
8GLP|1|L5|U|122
*
8GLP|1|L5|A|147
8GLP|1|L5|C|148
8GLP|1|L5|A|149
8GLP|1|L5|U|150
8GLP|1|L5|G|151
8GLP|1|L5|U|152
8GLP|1|L5|G|153

Current chains

Chain L5
28S rRNA

Nearby chains

Chain L8
5.8S ribosomal RNA; 5.8S rRNA
Chain LG
60S ribosomal protein L7a
Chain LN
60S ribosomal protein L15
Chain Lh
60S ribosomal protein L35

Coloring options:

Copyright 2025 BGSU RNA group. Page generated in 0.3384 s