IL_6LQM_014
3D structure
- PDB id
- 6LQM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of a pre-60S ribosomal subunit - state C
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.09 Å
Loop
- Sequence
- CCGG*CG
- Length
- 6 nucleotides
- Bulged bases
- 6LQM|1|2|C|340
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6LQM_014 not in the Motif Atlas
- Geometric match to IL_1U9S_005
- Geometric discrepancy: 0.2884
- The information below is about IL_1U9S_005
- Detailed Annotation
- Minor groove platform, major groove intercalation
- Broad Annotation
- Minor groove platform, major groove intercalation
- Motif group
- IL_55206.1
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 10
Unit IDs
6LQM|1|2|C|339
6LQM|1|2|C|340
6LQM|1|2|G|341
6LQM|1|2|G|342
*
6LQM|1|8|C|32
6LQM|1|8|G|33
Current chains
- Chain 2
- 28S rRNA
- Chain 8
- 5.8S rRNA
Nearby chains
- Chain D
- 60S ribosomal protein L4
- Chain M
- 60S ribosomal protein L37
- Chain Q
- 60S ribosomal protein L13
- Chain U
- 60S ribosomal protein L15
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