IL_6LQM_054

3D structure

PDB id

6LQM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a pre-60S ribosomal subunit - state C

Experimental method

ELECTRON MICROSCOPY

Resolution

3.09 Å

Loop

Sequence

CGAAG*UG(B9B)AG

Length

10 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: B9B

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6LQM_054 not in the Motif Atlas

Homologous match to IL_8C3A_033

Geometric discrepancy: 0.1295

The information below is about IL_8C3A_033

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_95716.2

Basepair signature

cWW-cWW-tHS-tHS-tSH-cWW

Number of instances in this motif group

18

Unit IDs

6LQM|1|2|C|1551
6LQM|1|2|G|1552
6LQM|1|2|A|1553
6LQM|1|2|A|1554
6LQM|1|2|G|1555
*
6LQM|1|2|U|1572
6LQM|1|2|G|1573
6LQM|1|2|B9B|1574
6LQM|1|2|A|1575
6LQM|1|2|G|1576

Current chains

Chain 2

28S rRNA

Nearby chains

Chain X

60S ribosomal protein L37a

Chain a

60S ribosomal protein L19

Chain m

60S ribosomal protein L8