IL_6LQM_065

3D structure

PDB id

6LQM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a pre-60S ribosomal subunit - state C

Experimental method

ELECTRON MICROSCOPY

Resolution

3.09 Å

Loop

Sequence

GAUUA*UUCUC

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6LQM_065 not in the Motif Atlas

Homologous match to IL_8C3A_044

Geometric discrepancy: 0.1327

The information below is about IL_8C3A_044

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_05145.3

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

13

Unit IDs

6LQM|1|2|G|1745
6LQM|1|2|A|1746
6LQM|1|2|U|1747
6LQM|1|2|U|1748
6LQM|1|2|A|1749
*
6LQM|1|2|U|1781
6LQM|1|2|U|1782
6LQM|1|2|C|1783
6LQM|1|2|U|1784
6LQM|1|2|C|1785

Current chains

Chain 2

28S rRNA

Nearby chains

Chain 5

5S ribosomal RNA; 5S rRNA

Chain J

60S ribosomal protein L10-like

Chain r

60S ribosomal protein L5