IL_6LQM_068

3D structure

PDB id

6LQM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a pre-60S ribosomal subunit - state C

Experimental method

ELECTRON MICROSCOPY

Resolution

3.09 Å

Loop

Sequence

AC(B8H)U*AACU

Length

8 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: B8H

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6LQM_068 not in the Motif Atlas

Geometric match to IL_1L9A_005

Geometric discrepancy: 0.2556

The information below is about IL_1L9A_005

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_85033.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

35

Unit IDs

6LQM|1|2|A|1858
6LQM|1|2|C|1859
6LQM|1|2|B8H|1860
6LQM|1|2|U|1861
*
6LQM|1|2|A|1873
6LQM|1|2|A|1874
6LQM|1|2|C|1875
6LQM|1|2|U|1876

Current chains

Chain 2

28S rRNA

Nearby chains

Chain 5

5S ribosomal RNA; 5S rRNA

Chain C

60S ribosomal protein L29

Chain w

60S ribosomal protein L7