IL_6LQM_070

3D structure

PDB id

6LQM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a pre-60S ribosomal subunit - state C

Experimental method

ELECTRON MICROSCOPY

Resolution

3.09 Å

Loop

Sequence

UUAA(P7G)G*CCCAUA

Length

12 nucleotides

Bulged bases

6LQM|1|2|U|2070

QA status

Modified nucleotides: P7G

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6LQM|1|2|U|1905
6LQM|1|2|U|1906
6LQM|1|2|A|1907
6LQM|1|2|A|1908
6LQM|1|2|P7G|1909
6LQM|1|2|G|1910
*
6LQM|1|2|C|2066
6LQM|1|2|C|2067
6LQM|1|2|C|2068
6LQM|1|2|A|2069
6LQM|1|2|U|2070
6LQM|1|2|A|2071

Current chains

Chain 2

28S rRNA

Nearby chains

Chain 5

5S ribosomal RNA; 5S rRNA

Chain Z

60S ribosomal protein L18

Chain t

60S ribosomal protein L32

Chain u

60S ribosomal protein L35a

Chain w

60S ribosomal protein L7