IL_6LQM_083
3D structure
- PDB id
- 6LQM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of a pre-60S ribosomal subunit - state C
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.09 Å
Loop
- Sequence
- UGAAC*GAA
- Length
- 8 nucleotides
- Bulged bases
- 6LQM|1|2|A|2428
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6LQM_083 not in the Motif Atlas
- Geometric match to IL_7A0S_047
- Geometric discrepancy: 0.2044
- The information below is about IL_7A0S_047
- Detailed Annotation
- C-loop
- Broad Annotation
- No text annotation
- Motif group
- IL_06671.1
- Basepair signature
- cWW-L-cWW-L-L
- Number of instances in this motif group
- 10
Unit IDs
6LQM|1|2|U|2415
6LQM|1|2|G|2416
6LQM|1|2|A|2417
6LQM|1|2|A|2418
6LQM|1|2|C|2419
*
6LQM|1|2|G|2427
6LQM|1|2|A|2428
6LQM|1|2|A|2429
Current chains
- Chain 2
- 28S rRNA
Nearby chains
- Chain 0
- Zinc finger protein 622
- Chain P
- 60S ribosomal protein L39
- Chain Y
- 60S ribosomal protein L17
- Chain a
- 60S ribosomal protein L19
Coloring options: