IL_6LQM_103

3D structure

PDB id

6LQM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a pre-60S ribosomal subunit - state C

Experimental method

ELECTRON MICROSCOPY

Resolution

3.09 Å

Loop

Sequence

CGAAGG*UGUUGACG

Length

14 nucleotides

Bulged bases

6LQM|1|2|A|3663, 6LQM|1|2|U|3679, 6LQM|1|2|C|3683

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6LQM_103 not in the Motif Atlas

Homologous match to IL_5TBW_083

Geometric discrepancy: 0.0751

The information below is about IL_5TBW_083

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_64509.1

Basepair signature

cWW-tWW-tWW-tSS-L-cWW

Number of instances in this motif group

2

Unit IDs

6LQM|1|2|C|3660
6LQM|1|2|G|3661
6LQM|1|2|A|3662
6LQM|1|2|A|3663
6LQM|1|2|G|3664
6LQM|1|2|G|3665
*
6LQM|1|2|U|3677
6LQM|1|2|G|3678
6LQM|1|2|U|3679
6LQM|1|2|U|3680
6LQM|1|2|G|3681
6LQM|1|2|A|3682
6LQM|1|2|C|3683
6LQM|1|2|G|3684

Current chains

Chain 2

28S rRNA

Nearby chains

Chain X

60S ribosomal protein L37a

Chain m

60S ribosomal protein L8