IL_6LQM_131

3D structure

PDB id

6LQM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a pre-60S ribosomal subunit - state C

Experimental method

ELECTRON MICROSCOPY

Resolution

3.09 Å

Loop

Sequence

UUG*CCAAG

Length

8 nucleotides

Bulged bases

6LQM|1|2|A|4488

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6LQM_131 not in the Motif Atlas

Geometric match to IL_3DD2_004

Geometric discrepancy: 0.3928

The information below is about IL_3DD2_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_09353.1

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

2

Unit IDs

6LQM|1|2|U|4468
6LQM|1|2|U|4469
6LQM|1|2|G|4470
*
6LQM|1|2|C|4485
6LQM|1|2|C|4486
6LQM|1|2|A|4487
6LQM|1|2|A|4488
6LQM|1|2|G|4489

Current chains

Chain 2

28S rRNA

Nearby chains

Chain I

60S ribosomal protein L9

Chain R

Ubiquitin-60S ribosomal protein L40

Chain V

60S ribosomal protein L13a