IL_6LQM_136

3D structure

PDB id

6LQM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a pre-60S ribosomal subunit - state C

Experimental method

ELECTRON MICROSCOPY

Resolution

3.09 Å

Loop

Sequence

CCAU*AGGCG

Length

9 nucleotides

Bulged bases

6LQM|1|2|C|4720

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6LQM_136 not in the Motif Atlas

Geometric match to IL_4WF9_054

Geometric discrepancy: 0.3754

The information below is about IL_4WF9_054

Detailed Annotation

Other IL

Broad Annotation

Other IL

Motif group

IL_74317.1

Basepair signature

cWW-tWH-tHS-cWW

Number of instances in this motif group

8

Unit IDs

6LQM|1|2|C|4582
6LQM|1|2|C|4583
6LQM|1|2|A|4584
6LQM|1|2|U|4585
*
6LQM|1|2|A|4717
6LQM|1|2|G|4718
6LQM|1|2|G|4719
6LQM|1|2|C|4720
6LQM|1|2|G|4721

Current chains

Chain 2

28S rRNA

Nearby chains

Chain B

60S ribosomal protein L3

Chain V

60S ribosomal protein L13a