IL_6LQM_143

3D structure

PDB id

6LQM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a pre-60S ribosomal subunit - state C

Experimental method

ELECTRON MICROSCOPY

Resolution

3.09 Å

Loop

Sequence

GAUUAU*AGAAUC

Length

12 nucleotides

Bulged bases

6LQM|1|2|A|4708

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6LQM_143 not in the Motif Atlas

Geometric match to IL_5J7L_350

Geometric discrepancy: 0.2224

The information below is about IL_5J7L_350

Detailed Annotation

UAA/GAN with extra cWW

Broad Annotation

No text annotation

Motif group

IL_49767.8

Basepair signature

cWW-cWW-tWH-L-tHS-cWW

Number of instances in this motif group

6

Unit IDs

6LQM|1|2|G|4680
6LQM|1|2|A|4681
6LQM|1|2|U|4682
6LQM|1|2|U|4683
6LQM|1|2|A|4684
6LQM|1|2|U|4685
*
6LQM|1|2|A|4705
6LQM|1|2|G|4706
6LQM|1|2|A|4707
6LQM|1|2|A|4708
6LQM|1|2|U|4709
6LQM|1|2|C|4710

Current chains

Chain 2

28S rRNA

Nearby chains

Chain I

60S ribosomal protein L9

Chain R

Ubiquitin-60S ribosomal protein L40

Chain V

60S ribosomal protein L13a