IL_6LQM_182

3D structure

PDB id

6LQM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a pre-60S ribosomal subunit - state C

Experimental method

ELECTRON MICROSCOPY

Resolution

3.09 Å

Loop

Sequence

C(5MC)AA(A2M)UGCCUC(OMG)*CGCG

Length

16 nucleotides

Bulged bases

6LQM|1|2|A2M|3785, 6LQM|1|2|C|3791, 6LQM|1|2|C|3810

QA status

Modified nucleotides: 5MC, A2M, OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6LQM_182 not in the Motif Atlas

Homologous match to IL_8C3A_095

Geometric discrepancy: 0.1002

The information below is about IL_8C3A_095

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_66080.1

Basepair signature

cWW-cWW-tSH-L-cWW-L

Number of instances in this motif group

5

Unit IDs

6LQM|1|2|C|3781
6LQM|1|2|5MC|3782
6LQM|1|2|A|3783
6LQM|1|2|A|3784
6LQM|1|2|A2M|3785
6LQM|1|2|U|3786
6LQM|1|2|G|3787
6LQM|1|2|C|3788
6LQM|1|2|C|3789
6LQM|1|2|U|3790
6LQM|1|2|C|3791
6LQM|1|2|OMG|3792
*
6LQM|1|2|C|3808
6LQM|1|2|G|3809
6LQM|1|2|C|3810
6LQM|1|2|G|3811

Current chains

Chain 2

28S rRNA

Nearby chains

Chain 3

60S ribosomal export protein NMD3