IL_6LQM_186

3D structure

PDB id

6LQM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a pre-60S ribosomal subunit - state C

Experimental method

ELECTRON MICROSCOPY

Resolution

3.09 Å

Loop

Sequence

GC(PSU)UG*UGA(PSU)

Length

9 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6LQM_186 not in the Motif Atlas

Homologous match to IL_8C3A_111

Geometric discrepancy: 0.5771

The information below is about IL_8C3A_111

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_50458.1

Basepair signature

cWW-cWW-L-R-L-cWW

Number of instances in this motif group

5

Unit IDs

6LQM|1|2|G|4401
6LQM|1|2|C|4402
6LQM|1|2|PSU|4403
6LQM|1|2|U|4404
6LQM|1|2|G|4405
*
6LQM|1|2|U|4439
6LQM|1|2|G|4440
6LQM|1|2|A|4441
6LQM|1|2|PSU|4442

Current chains

Chain 2

28S rRNA

Nearby chains

Chain 3

60S ribosomal export protein NMD3

Chain C

60S ribosomal protein L29