IL_6LQP_001

3D structure

PDB id

6LQP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 90S small subunit preribosomes in transition states (State A)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CG*UGG

Length

5 nucleotides

Bulged bases

6LQP|1|SA|G|1118

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6LQP_001 not in the Motif Atlas

Geometric match to IL_3IGI_004

Geometric discrepancy: 0.2556

The information below is about IL_3IGI_004

Detailed Annotation

Single bulged G

Broad Annotation

No text annotation

Motif group

IL_00225.13

Basepair signature

cWW-L-cWW

Number of instances in this motif group

49

Unit IDs

6LQP|1|3A|C|6
6LQP|1|3A|G|7
*
6LQP|1|SA|U|1117
6LQP|1|SA|G|1118
6LQP|1|SA|G|1119

Current chains

Chain 3A

U3 snoRNA

Chain SA

18S pre-rRNA

Nearby chains

Chain RN

Nucleolar complex protein 14