IL_6LQP_002
3D structure
- PDB id
- 6LQP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of 90S small subunit preribosomes in transition states (State A)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- ACU*AAACU
- Length
- 8 nucleotides
- Bulged bases
- 6LQP|1|5A|C|469
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6LQP_002 not in the Motif Atlas
- Geometric match to IL_4V9F_053
- Geometric discrepancy: 0.291
- The information below is about IL_4V9F_053
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_09990.4
- Basepair signature
- cWW-L-R-L-cWW
- Number of instances in this motif group
- 2
Unit IDs
6LQP|1|3A|A|48
6LQP|1|3A|C|49
6LQP|1|3A|U|50
*
6LQP|1|5A|A|466
6LQP|1|5A|A|467
6LQP|1|5A|A|468
6LQP|1|5A|C|469
6LQP|1|5A|U|470
Current chains
- Chain 3A
- U3 snoRNA
- Chain 5A
- 5' ETS
Nearby chains
- Chain 5C
- U3 small nucleolar RNA-associated protein 7
- Chain 5K
- rRNA-processing protein FCF1
- Chain AE
- U3 small nucleolar RNA-associated protein 10
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