IL_6LQP_010

3D structure

PDB id

6LQP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 90S small subunit preribosomes in transition states (State A)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GGAGA*UAUAC

Length

10 nucleotides

Bulged bases

6LQP|1|5A|A|102, 6LQP|1|5A|A|141

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6LQP|1|5A|G|100
6LQP|1|5A|G|101
6LQP|1|5A|A|102
6LQP|1|5A|G|103
6LQP|1|5A|A|104
*
6LQP|1|5A|U|140
6LQP|1|5A|A|141
6LQP|1|5A|U|142
6LQP|1|5A|A|143
6LQP|1|5A|C|144

Current chains

Chain 5A

5' ETS

Nearby chains

Chain A5

U3 small nucleolar RNA-associated protein 5

Chain AF

U3 small nucleolar RNA-associated protein 15

Chain AG

NET1-associated nuclear protein 1