IL_6LQP_013

3D structure

PDB id

6LQP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 90S small subunit preribosomes in transition states (State A)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UGAUGCG*CGUUUA

Length

13 nucleotides

Bulged bases

6LQP|1|5A|U|170

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6LQP|1|5A|U|167
6LQP|1|5A|G|168
6LQP|1|5A|A|169
6LQP|1|5A|U|170
6LQP|1|5A|G|171
6LQP|1|5A|C|172
6LQP|1|5A|G|173
*
6LQP|1|5A|C|223
6LQP|1|5A|G|224
6LQP|1|5A|U|225
6LQP|1|5A|U|226
6LQP|1|5A|U|227
6LQP|1|5A|A|228

Current chains

Chain 5A

5' ETS

Nearby chains

Chain 3G

13 kDa ribonucleoprotein-associated protein

Chain 5B

Bud site selection protein 21

Chain A4

U3 small nucleolar RNA-associated protein 4