IL_6LQP_017

3D structure

PDB id

6LQP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 90S small subunit preribosomes in transition states (State A)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CG*UUG

Length

5 nucleotides

Bulged bases

6LQP|1|5A|U|267

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6LQP_017 not in the Motif Atlas

Geometric match to IL_7KVT_002

Geometric discrepancy: 0.3507

The information below is about IL_7KVT_002

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_89505.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

117

Unit IDs

6LQP|1|5A|C|245
6LQP|1|5A|G|246
*
6LQP|1|5A|U|266
6LQP|1|5A|U|267
6LQP|1|5A|G|268

Current chains

Chain 5A

5' ETS

Nearby chains

Chain 5D

U3 small nucleolar RNA-associated protein 11

Chain RJ

Ribosome biogenesis protein BMS1

Chain SR

40S ribosomal protein S16-A