IL_6LQP_019
3D structure
- PDB id
- 6LQP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of 90S small subunit preribosomes in transition states (State A)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- GAAU*AC
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6LQP_019 not in the Motif Atlas
- Geometric match to IL_4V9F_068
- Geometric discrepancy: 0.279
- The information below is about IL_4V9F_068
- Detailed Annotation
- Major groove minor groove platform; mini C-loop
- Broad Annotation
- No text annotation
- Motif group
- IL_68140.4
- Basepair signature
- cWW-cSH-cWW
- Number of instances in this motif group
- 18
Unit IDs
6LQP|1|5A|G|337
6LQP|1|5A|A|338
6LQP|1|5A|A|339
6LQP|1|5A|U|340
*
6LQP|1|5A|A|386
6LQP|1|5A|C|387
Current chains
- Chain 5A
- 5' ETS
Nearby chains
- Chain 5C
- U3 small nucleolar RNA-associated protein 7
- Chain 5F
- U3 small nucleolar ribonucleoprotein protein IMP3
- Chain RQ
- U3 small nucleolar RNA-associated protein 14
- Chain RV
- Protein FAF1
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