IL_6LQP_021
3D structure
- PDB id
- 6LQP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of 90S small subunit preribosomes in transition states (State A)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- CC*GUG
- Length
- 5 nucleotides
- Bulged bases
- 6LQP|1|5A|U|382
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6LQP_021 not in the Motif Atlas
- Geometric match to IL_4FRG_002
- Geometric discrepancy: 0.2139
- The information below is about IL_4FRG_002
- Detailed Annotation
- Single bulged U
- Broad Annotation
- No text annotation
- Motif group
- IL_97561.3
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 147
Unit IDs
6LQP|1|5A|C|342
6LQP|1|5A|C|343
*
6LQP|1|5A|G|381
6LQP|1|5A|U|382
6LQP|1|5A|G|383
Current chains
- Chain 5A
- 5' ETS
Nearby chains
- Chain 5C
- U3 small nucleolar RNA-associated protein 7
- Chain 5E
- U3 small nucleolar RNA-associated protein MPP10
- Chain RC
- KRR1 small subunit processome component
- Chain RQ
- U3 small nucleolar RNA-associated protein 14
- Chain RV
- Protein FAF1
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