IL_6LQP_025

3D structure

PDB id

6LQP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 90S small subunit preribosomes in transition states (State A)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GCGAUA*UGGAACC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6LQP|1|5A|G|402
6LQP|1|5A|C|403
6LQP|1|5A|G|404
6LQP|1|5A|A|405
6LQP|1|5A|U|406
6LQP|1|5A|A|407
*
6LQP|1|5A|U|449
6LQP|1|5A|G|450
6LQP|1|5A|G|451
6LQP|1|5A|A|452
6LQP|1|5A|A|453
6LQP|1|5A|C|454
6LQP|1|5A|C|455

Current chains

Chain 5A

5' ETS

Nearby chains

Chain 5D

U3 small nucleolar RNA-associated protein 11

Chain 5F

U3 small nucleolar ribonucleoprotein protein IMP3

Chain 5J

rRNA-processing protein FCF2

Chain RJ

Ribosome biogenesis protein BMS1