IL_6LQP_035

3D structure

PDB id

6LQP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 90S small subunit preribosomes in transition states (State A)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CAUG*CAG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6LQP_035 not in the Motif Atlas

Geometric match to IL_4N0T_004

Geometric discrepancy: 0.3291

The information below is about IL_4N0T_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_99358.1

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

8

Unit IDs

6LQP|1|SA|C|50
6LQP|1|SA|A|51
6LQP|1|SA|U|52
6LQP|1|SA|G|53
*
6LQP|1|SA|C|427
6LQP|1|SA|A|428
6LQP|1|SA|G|429

Current chains

Chain SA

18S pre-rRNA

Nearby chains

Chain RJ

Ribosome biogenesis protein BMS1