IL_6LQP_036

3D structure

PDB id

6LQP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 90S small subunit preribosomes in transition states (State A)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UCUAAG*CUG

Length

9 nucleotides

Bulged bases

6LQP|1|SA|A|61, 6LQP|1|SA|A|62

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6LQP_036 not in the Motif Atlas

Homologous match to IL_4V88_389

Geometric discrepancy: 0.5127

The information below is about IL_4V88_389

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61299.2

Basepair signature

cWW-L-R-L-cWW-L-L

Number of instances in this motif group

3

Unit IDs

6LQP|1|SA|U|58
6LQP|1|SA|C|59
6LQP|1|SA|U|60
6LQP|1|SA|A|61
6LQP|1|SA|A|62
6LQP|1|SA|G|63
*
6LQP|1|SA|C|87
6LQP|1|SA|U|88
6LQP|1|SA|G|89

Current chains

Chain SA

18S pre-rRNA

Nearby chains

Chain RP

U3 small nucleolar RNA-associated protein 20

Chain SZ

40S ribosomal protein S24-A