IL_6LQP_040

3D structure

PDB id

6LQP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 90S small subunit preribosomes in transition states (State A)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UUAUUU*AUUCA

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6LQP_040 not in the Motif Atlas

Homologous match to IL_4V88_393

Geometric discrepancy: 0.2106

The information below is about IL_4V88_393

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_37842.2

Basepair signature

cWW-cWW-L-R-cWW-cWW-R-L

Number of instances in this motif group

4

Unit IDs

6LQP|1|SA|U|117
6LQP|1|SA|U|118
6LQP|1|SA|A|119
6LQP|1|SA|U|120
6LQP|1|SA|U|121
6LQP|1|SA|U|122
*
6LQP|1|SA|A|295
6LQP|1|SA|U|296
6LQP|1|SA|U|297
6LQP|1|SA|C|298
6LQP|1|SA|A|299

Current chains

Chain SA

18S pre-rRNA

Nearby chains

Chain SF

40S ribosomal protein S4-A

Chain SJ

40S ribosomal protein S8-A