IL_6LQP_054
3D structure
- PDB id
- 6LQP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of 90S small subunit preribosomes in transition states (State A)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- GAG*CGAGGAAC
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6LQP_054 not in the Motif Atlas
- Homologous match to IL_8C3A_420
- Geometric discrepancy: 0.1971
- The information below is about IL_8C3A_420
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_14882.1
- Basepair signature
- cWW-tSH-L-cWW-L-L-R-L
- Number of instances in this motif group
- 1
Unit IDs
6LQP|1|SA|G|514
6LQP|1|SA|A|515
6LQP|1|SA|G|516
*
6LQP|1|SA|C|536
6LQP|1|SA|G|537
6LQP|1|SA|A|538
6LQP|1|SA|G|539
6LQP|1|SA|G|540
6LQP|1|SA|A|541
6LQP|1|SA|A|542
6LQP|1|SA|C|543
Current chains
- Chain SA
- 18S pre-rRNA
Nearby chains
- Chain 5H
- Something about silencing protein 10
- Chain RJ
- Ribosome biogenesis protein BMS1
- Chain SK
- 40S ribosomal protein S9-A
Coloring options: