IL_6LQP_060

3D structure

PDB id

6LQP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 90S small subunit preribosomes in transition states (State A)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GU*AUC

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6LQP_060 not in the Motif Atlas

Geometric match to IL_7A0S_054

Geometric discrepancy: 0.1835

The information below is about IL_7A0S_054

Detailed Annotation

Single stack bend

Broad Annotation

No text annotation

Motif group

IL_26793.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

16

Unit IDs

6LQP|1|SA|G|631
6LQP|1|SA|U|632
*
6LQP|1|SA|A|967
6LQP|1|SA|U|968
6LQP|1|SA|C|969

Current chains

Chain SA

18S pre-rRNA

Nearby chains

Chain RC

KRR1 small subunit processome component

Chain SO

40S ribosomal protein S13

Chain SX

40S ribosomal protein S22-B