IL_6LQP_069

3D structure

PDB id

6LQP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 90S small subunit preribosomes in transition states (State A)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CC*GAG

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6LQP_069 not in the Motif Atlas

Geometric match to IL_5CNR_002

Geometric discrepancy: 0.1969

The information below is about IL_5CNR_002

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.6

Basepair signature

cWW-L-cWW

Number of instances in this motif group

130

Unit IDs

6LQP|1|SA|C|1033
6LQP|1|SA|C|1034
*
6LQP|1|SA|G|1083
6LQP|1|SA|A|1084
6LQP|1|SA|G|1085

Current chains

Chain SA

18S pre-rRNA

Nearby chains

Chain 5I

Protein SOF1

Chain 5K

rRNA-processing protein FCF1

Chain RV

Protein FAF1

Chain SX

40S ribosomal protein S22-B