IL_6LQP_078
3D structure
- PDB id
- 6LQP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of 90S small subunit preribosomes in transition states (State A)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- CACUG*CGUGCUGGGGAUAUUCAACGAG
- Length
- 27 nucleotides
- Bulged bases
- 6LQP|1|SA|U|1473, 6LQP|1|SA|G|1536
- QA status
- Missing nucleotides
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6LQP|1|SA|C|1470
6LQP|1|SA|A|1471
6LQP|1|SA|C|1472
6LQP|1|SA|U|1473
6LQP|1|SA|G|1474
*
6LQP|1|SA|C|1533
6LQP|1|SA|G|1534
6LQP|1|SA|U|1535
6LQP|1|SA|G|1536
6LQP|1|SA|C|1537
6LQP|1|SA|U|1538
6LQP|1|SA|G|1539
6LQP|1|SA|G|1540
6LQP|1|SA|G|1541
6LQP|1|SA|G|1542
6LQP|1|SA|A|1543
6LQP|1|SA|U|1544
6LQP|1|SA|A|1545
6LQP|1|SA|U|1566
6LQP|1|SA|U|1567
6LQP|1|SA|C|1568
6LQP|1|SA|A|1569
6LQP|1|SA|A|1570
6LQP|1|SA|C|1571
6LQP|1|SA|G|1572
6LQP|1|SA|A|1573
6LQP|1|SA|G|1574
Current chains
- Chain SA
- 18S pre-rRNA
Nearby chains
- Chain 5H
- Something about silencing protein 10
- Chain AF
- U3 small nucleolar RNA-associated protein 15
- Chain RH
- Ribosomal RNA small subunit methyltransferase NEP1
- Chain RN
- Nucleolar complex protein 14
- Chain SG
- 40S ribosomal protein S5
- Chain ST
- 40S ribosomal protein S18-A
Coloring options: