IL_6LQP_096

3D structure

PDB id

6LQP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 90S small subunit preribosomes in transition states (State A)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GGU*GAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6LQP_096 not in the Motif Atlas

Geometric match to IL_5TBW_068

Geometric discrepancy: 0.1805

The information below is about IL_5TBW_068

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

6LQP|1|SA|G|871
6LQP|1|SA|G|872
6LQP|1|SA|U|873
*
6LQP|1|SA|G|954
6LQP|1|SA|A|955
6LQP|1|SA|C|956

Current chains

Chain SA

18S pre-rRNA

Nearby chains

Chain RF

Ribosomal RNA-processing protein 7

Chain SC

40S ribosomal protein S1-A

Chain SO

40S ribosomal protein S13

Chain Sc

40S ribosomal protein S27-A