IL_6LQP_097
3D structure
- PDB id
- 6LQP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of 90S small subunit preribosomes in transition states (State A)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- GCCAGCGAGUCUAA*UAAUCUUGUGAAAC
- Length
- 28 nucleotides
- Bulged bases
- 6LQP|1|SA|G|1488, 6LQP|1|SA|U|1489, 6LQP|1|SA|C|1490, 6LQP|1|SA|U|1517
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6LQP|1|SA|G|1480
6LQP|1|SA|C|1481
6LQP|1|SA|C|1482
6LQP|1|SA|A|1483
6LQP|1|SA|G|1484
6LQP|1|SA|C|1485
6LQP|1|SA|G|1486
6LQP|1|SA|A|1487
6LQP|1|SA|G|1488
6LQP|1|SA|U|1489
6LQP|1|SA|C|1490
6LQP|1|SA|U|1491
6LQP|1|SA|A|1492
6LQP|1|SA|A|1493
*
6LQP|1|SA|U|1514
6LQP|1|SA|A|1515
6LQP|1|SA|A|1516
6LQP|1|SA|U|1517
6LQP|1|SA|C|1518
6LQP|1|SA|U|1519
6LQP|1|SA|U|1520
6LQP|1|SA|G|1521
6LQP|1|SA|U|1522
6LQP|1|SA|G|1523
6LQP|1|SA|A|1524
6LQP|1|SA|A|1525
6LQP|1|SA|A|1526
6LQP|1|SA|C|1527
Current chains
- Chain SA
- 18S pre-rRNA
Nearby chains
- Chain 5A
- 5' ETS
- Chain 5D
- U3 small nucleolar RNA-associated protein 11
- Chain 5G
- U3 small nucleolar ribonucleoprotein protein IMP4
- Chain 5J
- rRNA-processing protein FCF2
- Chain RI
- Ribosome biogenesis protein UTP30
- Chain RJ
- Ribosome biogenesis protein BMS1
- Chain SG
- 40S ribosomal protein S5
- Chain SR
- 40S ribosomal protein S16-A
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