IL_6LQP_100

3D structure

PDB id

6LQP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 90S small subunit preribosomes in transition states (State A)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CUCAGGAUCUG*CGGAGAAUUUG

Length

22 nucleotides

Bulged bases

6LQP|1|SA|A|1681

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6LQP|1|SA|C|1675
6LQP|1|SA|U|1676
6LQP|1|SA|C|1677
6LQP|1|SA|A|1678
6LQP|1|SA|G|1679
6LQP|1|SA|G|1680
6LQP|1|SA|A|1681
6LQP|1|SA|U|1682
6LQP|1|SA|C|1683
6LQP|1|SA|U|1684
6LQP|1|SA|G|1685
*
6LQP|1|SA|C|1716
6LQP|1|SA|G|1717
6LQP|1|SA|G|1718
6LQP|1|SA|A|1719
6LQP|1|SA|G|1720
6LQP|1|SA|A|1721
6LQP|1|SA|A|1722
6LQP|1|SA|U|1723
6LQP|1|SA|U|1724
6LQP|1|SA|U|1725
6LQP|1|SA|G|1726

Current chains

Chain SA

18S pre-rRNA

Nearby chains