IL_6LQQ_005

3D structure

PDB id

6LQQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 90S small subunit preribosomes in transition states (State B)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

GUGAG*CGAUGAUC

Length

13 nucleotides

Bulged bases

6LQQ|1|3A|U|255

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6LQQ|1|3A|G|111
6LQQ|1|3A|U|112
6LQQ|1|3A|G|113
6LQQ|1|3A|A|114
6LQQ|1|3A|G|115
*
6LQQ|1|3A|C|252
6LQQ|1|3A|G|253
6LQQ|1|3A|A|254
6LQQ|1|3A|U|255
6LQQ|1|3A|G|256
6LQQ|1|3A|A|257
6LQQ|1|3A|U|258
6LQQ|1|3A|C|259

Current chains

Chain 3A

U3 snoRNA

Nearby chains

Chain 3D

Nucleolar protein 56

Chain 3F

Ribosomal RNA-processing protein 9

Chain 3H

13 kDa ribonucleoprotein-associated protein

Chain 5J

rRNA-processing protein FCF2